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In each case, we first removed non-brain tissue using BET, with optimized parameters as previously described (Popescu et al., 2012). Next, global GM and WM volumes were quantified using the partial volume estimation within FSL-FAST (Smith et al., 2004); and deep grey matter (DGM) volumes were calculated using FSL-FIRST (Patenaude et al., 2011); specifically, volumes were obtained for the following
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Additionally, the usage of conditions for example ��SIE sensu stricto�� and also ��SIE sensu lato�� may be viewed as additional further complicating the entire conversation; we are able to see the utilization of these terms inside taxonomy as well as phylogeny, nevertheless we view absolutely no must for making use of these regarding theoretical constructs like the SIE. The actual debate over the
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The pathway analysis using the IPA software showed that #links# two immunological pathways were significantly enriched for differentially expressed proteins, namely acute phase response signaling and complement system signaling (Table?3). These two pathways had also been identified by the gene expression microarray analysis of nasal mucosa and protein markers selected based on that. We also noted
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